📚 Papers
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A FAIR research data infrastructure for high-throughput digital chemistry
Gauthier, Alice and Vancauwenberghe, Laure and Cousty, Jean-Charles and Matthey-Doret, Cyril and Franken, Robin and Maennel, Sabine and Mi{\'e}ville, Pascal and Riba Grognuz, Oksana
Digital Discovery, 2025, doi: doi.org/10.1039/D5DD00297D
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StatBot.Swiss: Bilingual Open Data Exploration in Natural Language
Nooralahzadeh, Farhad and Zhang, Yi and Smith, Ellery and Maennel, Sabine and Matthey-Doret, Cyril and De Fondeville, Raphaël and Stockinger, Kurt
Findings of the Association for Computational Linguistics: ACL 2024, 2024, doi: 10.18653/v1/2024.findings-acl.326
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Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection--related chromatin reorganization
Matthey-Doret, Cyril and Colp, Morgan J and Escoll, Pedro and Thierry, Agnes and Moreau, Pierrick and Curtis, Bruce and Sahr, Tobias and Sarrasin, Matt and Gray, Michael W and Lang, B Franz and others
Genome Research, 2022, doi: 10.1101/gr.276375.121
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Computer vision for pattern detection in chromosome contact maps
Matthey-Doret, Cyril and Baudry, Lyam and Breuer, Axel and Montagne, Remi and Guiglielmoni, Nadege and Scolari, Vittore and Jean, Etienne and Campeas, Arnaud and Chanut, Philippe Henri and Oriol, Edgar and others
Nature communications, 2020, doi: 10.1038/s41467-020-19562-7
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Mapping of multiple complementary sex determination loci in a parasitoid wasp
Matthey-Doret, Cyril and Van Der Kooi, Casper J and Jeffries, Daniel L and Bast, Jens and Dennis, Alice B and Vorburger, Christoph and Schwander, Tanja
Genome biology and evolution, 2019, doi: 10.1093/gbe/evz219
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Evolution and comparative ecology of parthenogenesis in haplodiploid arthropods
Van Der Kooi, Casper J and Matthey-Doret, Cyril and Schwander, Tanja
Evolution letters, 2017, doi: 10.1002/evl3.30
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cis-Acting complex-trait-associated lincRNA expression correlates with modulation of chromosomal architecture
Tan, Jennifer Yihong and Smith, Adam Alexander Thil and da Silva, Maria Ferreira and Matthey-Doret, Cyril and Rueedi, Rico and Sonmez, Reyhan and Ding, David and Kutalik, Zoltan and Bergmann, Sven and Marques, Ana Claudia
Cell reports, 2017, doi: 10.1016/j.celrep.2017.02.009
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🎓 Thesis
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Exploring the genomic complexity of bacterial infection in 3D
Matthey-Doret, Cyril
tel: tel-03679023
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📖 Book chapters
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Normalization of Chromosome Contact Maps: Matrix Balancing and Visualization
Matthey-Doret, Cyril and Baudry, Lyam and Mortaza, Shogofa and Moreau, Pierrick and Koszul, Romain and Cournac, Axel
Hi-C Data Analysis, pages 1--15, 2022
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